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Table 2 Descriptive statistics of the intersection of public genomic tracks (counted relatively to the gaps size) with genome assembly gaps

From: Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis

Tracks collection

Genome

Avg size of genomic intervals relatively to the track size (bp)

Avg overlap with gaps (bp)

Avg overlap with the start region of gaps (bp)

Avg overlap with the end region of gaps (bp)

Avg overlap with the middle portion of gaps (bp)

Overlap hotspot

Overlap hotspot value (bp)

Histone modifications

hg19

7.43e-06

0.0014

0.0029

0.0023

0.0011

chr4:40296396-40297096

0.0591

TFBS in K562

 

3.89e-04

0.0046

0.0059

0.0053

0.0046

chr7:139379377-139404377

0.0448

DNase I hypersensitive sites

 

5.52e-06

4.49e-06

3.28e-05

1.21e-05

0

chr3:194041961-194047251

0.0007

DNase I hypersensitive sites

hg38

4.68e-06

0.0024

0.0026

0.0023

0.0024

chr17:21976511-21976531

0.9732