Skip to main content

Table 1 Analysis tools used in this study

From: Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Read aligner / Expression modeler Differential expression tool
HISAT2/Stringtie Ballgown
Kallisto/Kallisto DESeq2
Salmon/Salmon edgeR
STAR/RSEM limma-voom
STAR/STAR NOISeqBio
  SAMseq
  1. Additional details are available in Additional file 3