From: Learning protein binding affinity using privileged information
Features | Classical SVM | Random forest | XGBoost | ||||||
---|---|---|---|---|---|---|---|---|---|
ROC | PR | Sr | ROC | PR | Sr | ROC | PR | Sr | |
Input space | |||||||||
 2-mer | 0.72 | 0.68 | −0.40 | 0.68 | 0.63 | − 0.38 | 0.72 | 0.66 | −0.40 |
 Blosum (Protein) | 0.70 | 0.63 | −0.36 | 0.69 | 0.62 | −0.39 | 0.69 | 0.63 | −0.34 |
Privileged space | |||||||||
 NIRP | 0.74 | 0.71 | −0.45 | 0.74 | 0.67 | −0.44 | 0.72 | 0.69 | −0.42 |
 Moal descriptors | 0.73 | 0.68 | −0.43 | 0.70 | 0.68 | −0.37 | 0.71 | 0.68 | −0.34 |
 Dias descriptors | 0.72 | 0.69 | −0.42 | 0.69 | 0.69 | −0.37 | 0.71 | 0.67 | −0.34 |
 Blosum (Interface) | 0.61 | 0.60 | −0.19 | 0.56 | 0.54 | −0.11 | 0.66 | 0.59 | −0.25 |