Table 10 The performance of different docking methods on Vina dataset (40 protein-peptide complexes) in terms of average L-RMSD
From: Benchmarking of different molecular docking methods for protein-peptide docking
Docking methods | Blind docking | Re-docking |
|---|---|---|
Autodock Vina-20a | 9.80 | 2.09 |
Autodock Vina-1 | 17.13 | 4.25 |
Hex-20 | 23.70 | 3.50 |
Hex-1 | 30.16 | 9.98 |
ZDOCK-20 | 11.16 | 11.48 |
ZDOCK-1 | 17.76 | 18.25 |
PatchDock-20 | 4.54 | 3.49 |
PatchDock-1 | 12.21 | 8.96 |
pepATTRACT-20 | 7.28 | 4.31 |
pepATTRACT-1 | 13.57 | 7.89 |
FRODOCK-20 | 4.45 | NA# |
FRODOCK-1 | 13.77 | NA |
ATTRACT-20 | 8.13 | NA |
ATTRACT-1 | 14.43 | NA |