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Table 4 Percentile of success rate where ‘Top pose’ and ‘Best pose’ are same or within the range of some specified differences

From: Benchmarking of different molecular docking methods for protein-peptide docking

(Best – Top) RMSD (Å)

ATTRACT

Hex

ZDOCK

PatchDock

pepATTRACT

FRODOCK

0.00

24.81

14.28

24.81

18.04

12.03

55.63

0.00–1.00

18.79

0.75

14.28

1.50

12.03

0.75

1.00–2.00

0.75

9.77

6.76

3.00

8.27

0.75

2.00–5.00

11.27

15.78

14.28

9.77

16.54

5.26

5.00–10.00

10.52

16.54

10.52

13.53

13.53

5.26

> 10.00

33.83

42.85

29.32

54.13

37.59

32.33