Table 7 The performance of best docking poses having different number of rotatable bonds in term of L-RMSD; poses generated by different methods on the PPDbench dataset
From: Benchmarking of different molecular docking methods for protein-peptide docking
Docking methods | 0–40 | 41–60 | > 60 |
|---|---|---|---|
ATTRACT-20a | 6.00 | 6.76 | 4.49 |
ATTRACT-1 | 11.78 | 17.03 | 16.21 |
Hex-20 | 23.55 | 26.07 | 27.63 |
Hex-1 | 33.56 | 35.72 | 38.21 |
ZDOCK-20 | 4.76 | 8.26 | 8.98 |
ZDOCK-1 | 11.96 | 16.97 | 17.62 |
PatchDock-20 | 9.16 | 7.28 | 8.51 |
PatchDock-1 | 16.54 | 20.16 | 24.05 |
pepATTRACT-20 | 9.44 | 15.61 | 13.81 |
pepATTRACT-1 | 16.64 | 22.80 | 27.48 |
FRODOCK-20 | 2.75 | 4.28 | 3.25 |
FRODOCK-1 | 10.25 | 13.97 | 10.70 |