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Table 4 Performance comparison of the network construction algorithms

From: A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen

Method Msp1a SSR GroEL Gold standard
Inexact threshold (seconds) 30.6 2106 211
Exact threshold (seconds) 27.9 100,131 60,434
DiWANN (seconds) 7.4 25,980 20,266
  1. This table shows the times taken to generate the distance matrix for each type of network, which is essentially the time for network generation