A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen

BMC Bioinformatics

Table 4 Performance comparison of the network construction algorithms

Method	Msp1a SSR	GroEL	Gold standard
Inexact threshold (seconds)	30.6	2106	211
Exact threshold (seconds)	27.9	100,131	60,434
DiWANN (seconds)	7.4	25,980	20,266

This table shows the times taken to generate the distance matrix for each type of network, which is essentially the time for network generation

ISSN: 1471-2105