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Table 1 Information for regions of S. aureus

From: A statistical method to identify recombination in bacterial genomes based on SNP incompatibility

Region

Size (kb)a

SNPsb

Genesc

Compatd

E C global e

E C local f

Ratiog

37th

228.41

5526

USA300_1420-1668

94.59%

1993

1808

9.28%

38th

97.74

4777

USA300_1669-1747

93.63%

1512

1400

7.41%

39th

36.17

1745

USA300_1747-1778

89.93%

914

577

36.87%

  1. aregion size
  2. bnumber of informative sites
  3. cgenes in the region
  4. dregional compatibility ratio
  5. ethe excess changes based on the global tree
  6. fthe excess changes based on the local tree
  7. gthe reduction ratio of excess changes, 1-\(\frac {{EC}_{local}}{{EC}_{global}}\)
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BMC Bioinformatics

ISSN: 1471-2105

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