GLUE: a flexible software system for virus sequence data

BMC Bioinformatics

Table 1 Examples of virus sequence data resources

Resource name	Virus species	Functions	References
REGA Genotyping Tool	HIV, HCV and others	Genotyping, Recombination analysis	Alcantara et al., 2009 [1]
The RNA Virus Database	Many viruses	Comparative analysis	Belshaw et al., 2009 [2]
Stanford HIV Drug Resistance Database	HIV	Sequence repository, Sequence interpretation	Shafer et al., 2006 [3], Gifford et al., 2009 [4] Liu et al., 2006 [5]
Global Initiative on Sharing All Influenza Data	Influenza	Sequence repository, Sequence interpretation, Visualisation	Shu and McCauley, 2017 [6]
Influenza Research Database	Influenza	Sequence repository Sequence interpretation, Bioinformatics workbench	Squires et al., 2012 [7]
Virus Pathogen Database and Analysis Resource	Many viruses	Sequence repository, Sequence interpretation, Bioinformatics workbench	Pickett et al., 2012 [8]
Nextstrain	Influenza, Ebola, Zika and others	Molecular epidemiology, Visualisation	Neher et al., 2015 [9] Hadfield et al., 2018 [10]
Geno2pheno[hcv]	HCV	Sequence interpretation	Kalaghatgi et al., 2016 [11]
The Los Alamos hepatitis C sequence database	HCV	Sequence database	Kuiken et al., 2005 [12]
The HIV Mutation Browser	HIV	Polymorphism database	Davey et al., 2014 [13]

ISSN: 1471-2105