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Table 2 Examples of GLUE commands with high-level functions

From: GLUE: a flexible software system for virus sequence data

Command Description
inherit feature-location Creates a new FeatureLocation for a specific feature F on a ReferenceSequence R1 based on an existing nucleotide homology in the project between R1 and another ReferenceSequence R2 which already defines a FeatureLocation for F.
show member feature-coverage Calculates percentages for the nucleotide coverage of a specific FeatureLocation by AlignmentMembers within a given Alignment.
amino-acid frequency Computes the frequency of different amino acid residues within a specific FeatureLocation for a set of AlignmentMembers.