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Table 5 Comparison of HCV-GLUE genotype assignment with GenBank Metadata and assignment from ViPR

From: GLUE: a flexible software system for virus sequence data

Methods giving

Method agreement

Number of sequences

non-null assignment results

  

Metadata & HCV-GLUE & ViPR

Metadata = HCV-GLUE = ViPR

60 464

 

Metadata = HCV-GLUE ≠ ViPR

518

 

Metadata ≠ HCV-GLUE = ViPR

71

 

Metadata = ViPR ≠ HCV-GLUE

0

 

Metadata ≠ HCV-GLUE ≠ ViPR

2

 

Total

61 055

Metadata & HCV-GLUE

Metadata = HCV-GLUE

5019

 

Metadata ≠ HCV-GLUE

26

 

Total

5045

Metadata & ViPR

Metadata = ViPR

6

 

Metadata ≠ ViPR

7

 

Total

13

HCV-GLUE & ViPR

HCV-GLUE = ViPR

13 977

 

HCV-GLUE ≠ ViPR

986

 

Total

14 963

Metadata only

Total

25

HCV-GLUE only

Total

1792

ViPR only

Total

4

All assignment results null

Total

31

 

Grand total

82 928