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Table 6 Comparison of HCV-GLUE subtype assignment with GenBank Metadata and assignment from ViPR

From: GLUE: a flexible software system for virus sequence data

Methods giving Method agreement Number of sequences
non-null assignment results   
Metadata & HCV-GLUE & ViPR Metadata = HCV-GLUE = ViPR 55 495
  Metadata = HCV-GLUE ≠ ViPR 1389
  Metadata ≠ HCV-GLUE = ViPR 1079
  Metadata = ViPR ≠ HCV-GLUE 47
  Metadata ≠ HCV-GLUE ≠ ViPR 4
  Total 58 014
Metadata & HCV-GLUE Metadata = HCV-GLUE 4508
  Metadata ≠ HCV-GLUE 206
  Total 4714
Metadata & ViPR Metadata = ViPR 7
  Metadata ≠ ViPR 13
  Total 20
HCV-GLUE & ViPR HCV-GLUE = ViPR 16 677
  HCV-GLUE ≠ ViPR 1306
  Total 17 983
Metadata only Total 129
HCV-GLUE only Total 1667
ViPR only Total 18
All assignment results null Total 383
  Grand total 82 928
  1. A non-null subtype assignment implies a non-null genotype assignment