Table 2 Average execution time for AutoKEGGRec within Matlab 2017b on a Dell Latitude 7490 with an I7-7600U using 2-core-parallelization
From: Automated generation of genome-scale metabolic draft reconstructions based on KEGG
Tested strains incl. number of organisms | Mean runtime [s] | Reactions/metabolites | Giant component [#, %] |
|---|---|---|---|
E. coli K-12, 5 KEGG IDs | 2,995±65 | 1226/1188 | 1215/99.10% |
P. putida, 12 KEGG IDs | 3,957±166 | 1412/1445 | 1400/99.15% |
B. subtilis, 15 KEGG IDs | 3,538±216 | 1108/1134 | 1103/99.55% |
E. coli, 20 KEGG IDs | 4,792±289 | 1342/1302 | 1331/99.18% |
E. coli, 25 KEGG IDs | 5,618±322 | 1351/1312 | 1340/99.19% |
E. coli, 30 KEGG IDs | 6,724±130 | 1354/1316 | 1343/99.19% |
E. coli, 35 KEGG IDs | 7,750±208 | 1358/1319 | 1347/99.19% |
E. coli, 40 KEGG IDs | 9,115±198 | 1359/1321 | 1348/99.19% |
E. coli, 45 KEGG IDs | 10,032±651 | 1359/1321 | 1348/99.19% |
E. coli, 50 KEGG IDs | 11,466±1,065 | 1359/1321 | 1348/99.19% |
E. coli, 55 KEGG IDs | 12,687±1,269 | 1359/1321 | 1348/99.19% |
E. coli, 60 KEGG IDs | 13,848±1,658 | 1359/1321 | 1348/99.19% |
E. coli, 65 KEGG IDs | 15,082±1,850 | 1360/1323 | 1349/99.19% |