Table 3 Comparison of eco, the FDR generated by AutoKEGGRec, with iAF1260 [31], iJO1366 [32], and ModelSeed model 511145.180 generated with default settings
From: Automated generation of genome-scale metabolic draft reconstructions based on KEGG
Comparison | eco | iAF1260 | iJO1366 | 511145.180 |
|---|---|---|---|---|
# of reactions BR | 1224 | 2382 | 2583 | 1635 |
# of metabolites BR | 1185 | 1668 | 1805 | 1573 |
# of reactions AR | 1224 | 2081 | 2256 | 1510 |
# of metabolites AR | 1185 | 1668 | 1805 | 1573 |
network mean degree | 4.203 | 4.727 | 4.765 | 4.527 |
network mean shortest path | 4.470 | 4.549 | 4.493 | 3.860 |
# of blocked metabolites | 519 | 369 | 390 | 746 |
# of same-sign-metabolites | 160 | 89 | 84 | 136 |
# of genes in model | 1263 | 1260 | 1366 | 1139 |
# of shared genes with eco | 1263 | 927 | 981 | 794 |