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Table 11 Summary of all the test results

From: Representativeness of variation benchmark datasets

dataset

no. of chromosomesa

CATH Class level

CATH Architecture level

CATH Topology level

CATH Homology level

EC 1st level

EC 2nd level

EC 3rd level

EC 4th level

Pfam

GO terms level

GO aspect level

score without chromosomesb

DS1

7

1c

1

0d

0

1

1

1

0

0

0

1

6

DS2

8

1

1

0

0

1

1

1

0

0

0

1

6

DS3

3

1

1

0

0

1

1

0

0

0

0

1

5

DS4

9

1

1

0

0

1

1

1

0

0

0

1

6

DS5

5

1

1

0

0

1

1

0

0

0

0

1

5

DS6

9

1

1

0

0

1

1

1

0

0

0

1

6

DS7

3

1

1

0

0

1

1

0

0

0

0

1

5

DS8

7

1

1

0

0

1

1

1

0

0

0

1

6

DS9

6

1

1

0

0

1

1

0

0

0

0

1

5

DS10

9

1

1

0

0

1

1

1

0

0

0

1

6

DS11

5

1

1

0

0

1

1

0

0

0

0

1

5

DS12

9

1

0

0

0

1

0

0

0

0

0

1

3

DS13

3

1

0

0

0

1

0

0

0

0

0

1

3

DS14

11

1

1

0

0

1

1

0

0

0

0

1

5

DS15

5

1

1

0

0

1

1

0

0

0

0

1

5

DS16

13

1

0

0

0

1

0

0

0

0

0

1

3

DS17

6

1

0

0

0

1

0

0

0

0

0

1

3

DS18

6

1

1

0

0

1

1

0

0

0

0

1

5

DS19

5

1

1

0

0

1

1

0

0

0

0

1

5

DS20

11

1

1

0

0

1

1

0

0

0

0

1

5

DS21

4

1

1

0

0

1

1

1

0

0

0

1

6

DS22

11

1

1

0

0

1

1

1

0

0

0

1

6

DS23

3

1

1

0

0

1

1

0

0

0

0

1

5

DS24

2

1

1

0

0

1

1

1

0

0

0

1

6

  1. anumber of chromosomes with unbiased distribution of variants
  2. bsum of scores in all categories tested
  3. ccategory has score 1 if distribution was unbiased
  4. dcategory has score 0 if distribution was biased