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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Optimising orbit counting of arbitrary order by equation selection

Fig. 5

The Jesse interface in Cytoscape. a Search Options panel, with basic options (graphlet order, search network, only count graphlets for selected nodes). b File Options panel, used to select orbit and tree files for graphlets of order greater than 7. c File Generation panel, used to generate orbit and tree files for graphlets of order greater than 7. d Run button to start the algorithm. e Results panel, where the graphlet degrees of each node can be seen. Selecting a node in the network view will also select it in the results panel, and vice versa, as indicated by the arrow. Clicking on a column header will visualise the corresponding orbit. f Buttons to save the used equations and computed graphlet degrees

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