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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

Fig. 5

Circos plots for Arabidopsis thaliana haploid assemblies. Illumina PE reads were mapped, and heterozygous SNPs were called for the draft FALCON Unzip assembly (a) and the assembly curated with Purge Haplotigs (b). The tracks shown in the circos plots are: Contigs (ordered by length) (i), Read-depth histogram (reads per genome window; blue: median read-depth, yellow: half read-depth, red: very low/high read-depth) (ii), and SNP density (SNPs per genome window; blue: low SNP density, red: high SNP density) (iii). There were 577.0, 667.0, and 665.1 thousand filtered heterozygous SNP calls for the draft, Purge Hapltogs-processed, and Redundans-processed assemblies respectively

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