Name | web-based design, display, and share | Time-series interactive animation | Support Metanode/Module | Temporal profile analysis | Reproducibility | Learning curve | Open Source |
---|---|---|---|---|---|---|---|
Panoromix | web-based, full interactivity | Playing mode with highlight, annotation, search, filtering | Yes | Sentivity filtering; display progfiles | web-based model depository | No software intallation, no programming needed | Free |
Cytoscape | desktop version and Cytoscape.js | Non-interactive videos using DynNetwork | Yes | Sensitivity filtering; display profiles | share session files | Need to install; need to learn plugins; extensive programming required for Cytoscape.js | Free |
Gephi | desktop | Non-interactive videos | Metanode pugin | No | share session files | Need to install; need to learn plugins | Free |
IPA | Web-based | No | No | No | share session files | Need toinstall; no programming required | Commercial |
R packages | Shiny server | Non-interactive videos using animation + igraph | No | Statistical Packages | R Notebook/R Markdown | Need to install R and many packages; Extensive programming needed | Shiny server (have commercial version) |
VisANT | Web-based | No | Yes | No | web sharing | Need to install, no programming needed | Free |
yED | desktop and yED live | No | No | No | share session files | No software installation, no programming needed | Free |
VANTED | desktop | No | No | display profiles | share excel files | Need to install, no programming needed | Free |
NAViGaTOR | desktop | No | No | display profiles | share text files | currently unsupported, no programming needed | Free |
PATIKA | web-based | No | Yes | display profiles | share text file | currently unsupported, no programming needed | Free |
Cancer PanorOmics | web-based | No | No | No | share text file | No software installation, no programming needed | Free |
GENeVis | desktop | No | No | display profiles | share text file | Need to install, no programming needed | Free |