Analyzing the similarity of samples and genes by MG-PCC algorithm, t-SNE-SS and t-SNE-SG maps

BMC Bioinformatics

Table 3 Statistics of Accuracy, F-Measure, RI and NMI of S-genes, N-genes and O-genes

Data	NO. of clusters	Genes	Accuracy	F-Measure	RI	NMI
data-6	6	S-genes	0.956	0.956	0.323	0.888
	7	S-genes	0.794	0.788	0.092	0.672
	8	S-genes	0.803	0.799	0.094	0.660
	6	N-genes	0.321	0.267	-0.084	0.422
	6	O-genes	0.318	0.263	-0.081	0.240
data-7	6	S-genes	0.901	0.897	0.237	0.744
	7	S-genes	0.825	0.814	0.119	0.742
	8	S-genes	0.811	0.813	0.096	0.683
	6	N-genes	0.305	0.271	-0.079	0.487
	6	O-genes	0.308	0.264	-0.079	0.284
data-8	5	S-genes	0.956	0.956	0.293	0.911
	6	S-genes	0.947	0.947	0.257	0.782
	7	S-genes	0.937	0.937	0.181	0.733
	8	S-genes	0.884	0.882	0.137	0.718
	6	N-genes	0.275	0.251	-0.084	0.540
	6	O-genes	0.281	0.249	-0.089	0.340
data-9	5	S-genes	0.977	0.977	0.503	0.842
	6	S-genes	0.827	0.830	0.126	0.814
	7	S-genes	0.947	0.947	0.374	0.741
	8	S-genes	0.962	0.962	0.575	0.693
	9	S-genes	0.893	0.891	0.224	0.692
	8	N-genes	0.258	0.245	-0.070	0.442
	8	O-genes	0.229	0.225	-0.086	0.3043
data-10	3	S-genes	0.901	0.897	0.132	0.902
	4	S-genes	0.829	0.824	0.083	0.807
	5	S-genes	0.716	0.669	0.054	0.601
	6	S-genes	0.779	0.776	0.115	0.714
	7	S-genes	0.895	0.894	0.092	0.683
	8	S-genes	0.593	0.623	-0.008	0.674
	3	N-genes	0.299	0.290	-0.087	0.637
	3	O-genes	0.277	0.203	-0.081	0.088

ISSN: 1471-2105