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Table 3 Mappability, precision, sensitivity and accuracy of aligners

From: BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data

Data set

Aligner

Mappability

Precision

Sensitivity

Accuracy

With 0% error

BiSpark†

0.9569

1.0

0.9569

0.9569

 

Bismark

0.9454

1.0

0.9454

0.9454

 

Bison

0.8030

0.6090

0.7129

0.4891

With 1% error

BiSpark†

0.9494

0.9892

0.9489

0.9392

 

Bismark

0.9440

0.9961

0.9438

0.9403

 

Bison

0.8297

0.5812

0.7391

0.4823

With 2% error

BiSpark†

0.9422

0.9800

0.9411

0.9234

 

Bismark

0.9182

0.9862

0.9171

0.9055

 

Bison

0.8315

0.5729

0.7387

0.4763

  1. †The results from both BiSpark-plain and balance are denoted as BiSpark because the difference is only in the part where data is distributed, which means the results of two versions are always same
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BMC Bioinformatics

ISSN: 1471-2105

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