Table 1 Method Performance Estimates
From: Capturing context-specific regulation in molecular interaction networks
A. Sensitivity | Genes | Links | ||||
LIMMA | BioNet | CoNE | LIMMA | BioNet | CoNE | |
Topology | -0.002 | -0.303 | 0.302 | 0.011 | -0.360 | -0.009 |
Network Size | -0.129 | -0.608 | -0.177 | -0.188 | -0.386 | -0.186 |
B. Specificity | Genes | Links | ||||
LIMMA | BioNet | CoNE | LIMMA | BioNet | CoNE | |
Topology | -0.079 | -0.151 | -0.659 | 0.217 | 0.687 | -0.0306 |
Network Size | 0.497 | 1.025 | 0.865 | 1.266 | 1.253 | 0.970 |
C. Precision | Genes | Links | ||||
LIMMA | BioNet | CoNE | LIMMA | BioNet | CoNE | |
Topology | -0.000 | -0.041 | 0.015 | -0.020 | -0.041 | -0.003 |
Network Size | 0.005 | 0.016 | 0.058 | 0.057 | 0.038 | 0.028 |