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Table 12 Results of our modal and of other state-of-the-art methods on S. cerevisiae

From: Predicting protein-protein interactions using high-quality non-interacting pairs

Method Negative samples ACC PE RE SPE MCC F1 AUC
Our method Sub 93.79% ± 0.43% 95.18% ± 0.41% 92.25% ± 0.78% 95.33% ± 0.45% 87.62% ± 0.83% 93.69% ± 0.38% 98.13% ± 0.17%
  NIP-SS 94.34% ± 0.38% 95.62% ± 0.75% 92.96% ± 0.40% 95.74% ± 0.75% 88.73% ± 0.77% 94.27% ± 0.34% 98.24% ± 0.11%
  NIP-RW 87.92% ± 0.24% 90.04% ± 1.69% 85.32% ± 1.90% 90.48% ± 2.20% 75.97% ± 0.55% 87.59% ± 0.35% 94.23% ± 0.12%
Du’s work [27] Sub 92.58% ± 0.38% 94.21% ± 0.45% 90.95% ± 0.41% 94.41% ± 0.45% 85.41% ± 0.76% 92.55% ± 0.39% 97.55% ± 0.16%
  NIP-SS 94.44% ± 0.35% 95.46% ± 0.38% 93.44% ± 0.45% 95.45% ± 0.41% 88.90% ± 0.68% 94.44% ± 0.37% 98.22% ± 0.20%
  NIP-RW 88.59% ± 0.32% 92.61% ± 0.41% 84.14% ± 0.43% 93.13% ± 0.35% 77.52% ± 0.59% 88.17% ± 0.34% 94.73% ± 0.18%
You’s work [25] Sub 89.15% ± 0.33% 90.00% ± 0.57% 88.10% ± 0.17% 90.21% ± 0.61% 78.33% ± 0.67% 89.04% ± 0.31% 94.78% ± 0.21%
  NIP-SS 94.42% ± 0.47% 96.71% ± 0.47% 91.96% ± 0.64% 96.87% ± 0.46% 88.94% ± 0.92% 94.28% ± 0.49% 98.46% ± 0.12%
  NIP-RW 86.03% ± 0.43% 89.19% ± 0.60% 82.00% ± 0.70% 90.06% ± 0.64% 72.30% ± 0.85% 85.44% ± 0.46% 93.33% ± 0.46%
Zhou’s work [23] Sub 88.76% ± 0.37% 89.44% ± 0.27% 87.89% ± 0.45% 89.62% ± 0.30% 77.53% ± 0.53% 88.66% ± 0.28% 94.69% ± 0.31%
  NIP-SS 92.10% ± 0.34% 93.48% ± 0.45% 90.51% ± 0.73% 93.68% ± 0.49% 84.24% ± 0.67% 91.97% ± 0.37% 97.29% ± 0.16%
  NIP-RW 82.64% ± 0.33% 83.98% ± 0.34% 80.67% ± 0.48% 84.61% ± 0.36% 65.34% ± 0.65% 82.30% ± 0.35% 90.00% ± 0.39%
Yang’s work [22] Sub 84.81% ± 0.37% 87.53% ± 0.14% 81.18% ± 0.84% 88.44% ± 0.18% 69.80% ± 0.71% 84.23% ± 0.47% 90.03% ± 0.31%
  NIP-SS 89.18% ± 0.35% 93.34% ± 0.33% 84.38% ± 0.53% 93.98% ± 0.31% 78.73% ± 0.69% 88.64% ± 0.38% 95.50% ± 0.20%
  NIP-RW 83.98% ± 0.48% 86.09% ± 0.67% 81.07% ± 0.80% 86.89% ± 0.76% 68.09% ± 0.97% 83.50% ± 0.51% 91.45% ± 0.27%
Guo’s work [21] Sub 87.88% ± 0.56% 88.16% ± 0.90% 87.53% ± 0.59% 88.24% ± 1.02% 75.77% ± 1.12% 87.84% ± 0.53% 93.69% ± 0.33%
  NIP-SS 90.00% ± 0.43% 90.45% ± 0.68% 89.45% ± 0.69% 90.55% ± 0.77% 80.01% ± 0.86% 89.94% ± 0.43% 95.02% ± 0.27%
  NIP-RW 82.43% ± 0.27% 83.48% ± 0.40% 80.87% ± 0.45% 83.99% ± 0.49% 64.89% ± 0.54% 82.15% ± 0.27% 89.04% ± 0.33%