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Table 3 Recommended parameters of our model

From: Predicting protein-protein interactions using high-quality non-interacting pairs

Name Range Recommend
Learning rate 1,0.1,0.001,0.002,0.003,0.0001 0.002
Batch size 32,64,128,256,512,1024,2056 1024,2056
Weight initialization uniform, normal, lecun_uniform, glorot_normal, glorot_uniform glorot_normal
Per-parameter adaptive learning rate SGD, RMSprop, Adagrad, Adadelta, Adam, Adamax, Nadam Adam
Activation function relu, tanh, sigmoid, softmax, softplus relu, sigmoid
Dropout rate 0.5, 0.6, 0.7 0.6
Depth 2, 3, 4, 5, 6, 7, 8,9 3
Width 16, 32, 64, 128, 256, 1024, 2048, 4096 128, 64, 32
GPU Yes, No Yes