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Table 5 The degree distribution of proteins of different datasets on S. cerevisiae, H. sapiens, and M. musculus

From: Predicting protein-protein interactions using high-quality non-interacting pairs

  

r

Maximum degree

Number

The proportion of proteins/the number of interactions (non-interactions)

     

1<degree<10

10<degree<20

20<degree<30

30<degree<50

50<degree<70

70<degree<80

80<degree<100

100<degree<150

degree>150

S. cerevisiae

Positive

6.8763

252

4382

0.7976/0.3418

0.1130/0.2131

0.0436/0.1372

0.0299/0.1429

0.0087/0.0667

0.0014/0.0132

0.0030/0.0341

0.0025/0.0382

0.0005/0.0128

 

NIP-SS-NonControl

8.0493

1439

3814

0.8589/0.2841

0.0679/0.1092

0.0260/0.0723

0.0207/0.0905

0.0105/0.0680

0.0029/0.0238

0.0026/0.0259

0.0042/0.0524

0.0063/0.2739

 

NIP-SS

7.9391

154

3861

0.8052/0.3406

0.0873/0.1248

0.0303/0.0863

0.0544/0.2381

0.0080/0.0492

0.0049/0.0402

0.0028/0.0272

0.0065/0.0851

0.0005/0.0085

 

Sub

12.7178

105

2516

0.6355/ 0.2302

0.2134/0.2196

0.0254/0.0467

0.0552/0.1928

0.0672/0.2902

0.0016/0.0089

0.0012/0.0085

0.0004/0.0031

0/0

 

Random method

6.8781

18

4381

0.8274/0.7327

0.1726/0.2673

0/0

0/0

0/0

0/0

0/0

0/0

0/0

H. sapiens

Positive

1.8146

31

2384

0.9727/0.8470

0.0243/0.1262

0.0025/0.0219

0.0004/0.0049

0/0

0/0

0/0

0/0

0/0

 

NIP-SS-NonControl

2.9263

312

1709

0.9427/0.4741

0.0234/0.0866

0.0164/0.1043

0.0053/0.0514

0.0070/0.1067

0.0018/0.0343

0/0

0.0029/0.0961

0.0006/0.0465

 

NIP-SS

2.7760

30

1777

0.9572/0.8012

0.0315/0.1250

0.0113/0.0738

0/0

0/0

0/0

0/0

0/0

0/0

 

Sub

6.5563

39

888

0.7331/0.3221

0.1486/0.2697

0.1002/0.3279

0.0180/0.0803

0/0

0/0

0/0

0/0

0/0

 

Random method

2.0212

9

2221

1.0000/1.0000

0/0

0/0

0/0

0/0

0/0

0/0

0/0

0/0

M. musculus

Positive

0.9473

24

948

0.9926/0.9450

0.0063/0.0411

0.0011/0.0139

0/0

0/0

0/0

0/0

0/0

0/0

 

NIP-SS-NonControl

1.9025

99

636

0.9513/0.5929

0.0299/0.1389

0.0110/0.0882

0.0016/0.0169

0.0016/0.0275

0.0016/0.0380

0.0031/0.0977

0/0

0/0

 

NIP-SS

2.0163

20

612

0.9624/0.8212

0.0376/0.1788

0/0

0/0

0/0

0/0

0/0

0/0

0/0

 

Sub

6.0190

52

263

0.7262/0.1446

0.1901/0.3857

0/0

0.0798/0.4415

0.0038/0.0282

0/0

0/0

0/0

0/0

 

Random method

1.2678

8

814

1/1

0/0

0/0

0/0

0/0

0/0

0/0

0/0

0/0