Skip to main content

Table 3 Performance comparison of various prediction methods on PDNA-62 with 5-fold cross-validation

From: PDRLGB: precise DNA-binding residue prediction using a light gradient boosting machine

Methods ACC SN SP ST PRE F1 MCC AUC P-value
Dps-pred 0.791 0.403 0.818 0.611 0.279 0.330 0.191 - -
Dbs-pssm 0.664 0.682 0.660 0.671 0.210 0.376 0.249 - -
BindN 0.703 0.694 0.705 0.700 0.291 0.410 0.297 0.752 -
Dp-bind 0.781 0.792 0.772 0.782 0.378 0.512 0.490 - -
BindN-RF 0.782 0.781 0.782 0.782 0.385 0.516 0.436 0.861 -
BindN+ 0.790 0.773 0.793 0.783 0.395 0.523 0.443 0.859 -
PreDNA 0.794 0.768 0.797 0.783 0.398 0.524 0.424 - -
EL _PSSM-RT 0.808 0.854 0.801 0.826 0.428 0.569 0.507 0.901 **
PDRLGB 0.815 0.863 0.806 0.835 0.438 0.581 0.523 0.912 1.79 ×10−5