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Table 2 The main features of the interaction databases for constructing gene regulatory network

From: miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase

Database Interaction miRNA mRNA,TF
   Version Name Accession Symbols Entrez ID
miRTarbase v7 miRNA →mRNA,TF v21 \(\checkmark \) × \(\checkmark \) \(\checkmark \)
miRecords v4   v16 \(\checkmark \) × \(\checkmark \) ×
TransmiR v1.2 TF →miRNA v17 \(\checkmark \) × \(\checkmark \) \(\checkmark \)
ENCODE network [29]   v17 \(\checkmark \) × \(\checkmark \) ×
TRED TF →mRNA,TF - - - × \(\checkmark \)
ENCODE Chip-seq   - - - × \(\checkmark \)