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Fig. 2 | BMC Bioinformatics

Fig. 2

From: VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database

Fig. 2

VarGenius files and data management: the samples sheet data (containing FASTQ paths, analysis, samples and read files names, sequencing type, target file and user id) is imported into the database. VarGenius automatically chooses different settings for two predefined pipelines: one for exomes and the second for amplicon panels. The different tasks (quality check, alignment, refinement, variant calling, variant filtering and output production) are executed as Torque jobs using QSUB command and scheduled in the cluster

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