Fig. 6
From: An SVM-based method for assessment of transcription factor-DNA complex models
Prediction of a complex model for 2 ac0, a tetramer (a) and for a dimer from 2 ac0 (b). The conformation with the lowest orientation potential (green), the lowest DDNA3 potential (orange) and the highest quality score or lowest 1- p (blue) are highlighted across the three selection methods. The RMSD cutoff is set at 3 Å (vertical gray dashed line) and the quality score cutoff value is set at 0.5 (horizontal gray dashed line)