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Fig. 5 | BMC Bioinformatics

Fig. 5

From: CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

Fig. 5

Genomic context for genes involved in the trail in Fig. 4a. Two additional reactions are shown: R02291 (EC 1.2.1.11) linking reactions R00480 (EC 2.7.2.4) and {R01773, R01775} (EC 1.1.1.3), and R01518 (EC 5.4.2.12) representing a phosphoglycerate mutase activity farther along the glycine, serine, and threonine metabolism pathway. Neighboring genes are linked by an edge. Genes are color-coded according to the reactions in which the enzymes they encode take part. Two pairs of neighboring genes on different strands of the bacterial chromosome are shown for L. acidophilus (lac) and G. aurantiaca (gau). The gene in white in T. thermophilus (tth) encodes a hypothetical protein. D. acetiphilus (dap) and R. baltica (rba) exhibit a similar gene ordering pattern to N. defluvii (nde), D. indicum (din), and B. fragilis (bfr) (see text)

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