TY - BOOK AU - Carolan, M. PY - 2017 DA - 2017// TI - Food security and policy UR - https://doi.org/10.1016/B978-0-12-802778-3.00024-X DO - 10.1016/B978-0-12-802778-3.00024-X ID - Carolan2017 ER - TY - STD TI - Food, Nations AOotU. Food wastage footprint: impacts on natural resources: summary report. Rome: FAO; 2013. ID - ref2 ER - TY - BOOK AU - Connor, E. E. AU - Hutchison, J. L. AU - Norman, H. D. PY - 2012 DA - 2012// TI - Estimating feed efficiency of lactating dairy cattle using residual feed intake. Feed Efficiency in the Beef Industry ID - Connor2012 ER - TY - CHAP AU - Varga, G. AU - Dechow, C. PY - 2013 DA - 2013// TI - Can we use residual feed intake to enhance dairy production efficiency? BT - Proceedings of the 22nd Tri-State Dairy Nutrition Conference, Fort Wayne, Indiana, USA, 23–24 April 2013: 2013: Michigan State University ID - Varga2013 ER - TY - JOUR AU - Koch, R. M. AU - Swiger, L. A. AU - Chambers, D. AU - Gregory, K. E. PY - 1963 DA - 1963// TI - Efficiency of feed use in beef cattle JO - J Anim Sci VL - 22 UR - https://doi.org/10.2527/jas1963.222486x DO - 10.2527/jas1963.222486x ID - Koch1963 ER - TY - JOUR AU - Herd, R. AU - Arthur, P. PY - 2009 DA - 2009// TI - Physiological basis for residual feed intake JO - J Anim Sci VL - 87 UR - https://doi.org/10.2527/jas.2008-1345 DO - 10.2527/jas.2008-1345 ID - Herd2009 ER - TY - JOUR AU - Williams, Y. AU - Pryce, J. AU - Grainger, C. AU - Wales, W. AU - Linden, N. AU - Porker, M. AU - Hayes, B. PY - 2011 DA - 2011// TI - Variation in residual feed intake in Holstein-Friesian dairy heifers in southern Australia JO - J Dairy Sci VL - 94 UR - https://doi.org/10.3168/jds.2010-4015 DO - 10.3168/jds.2010-4015 ID - Williams2011 ER - TY - JOUR AU - Arthur, J. P. AU - Herd, R. PY - 2008 DA - 2008// TI - Residual feed intake in beef cattle JO - Rev Bras Zootec VL - 37 UR - https://doi.org/10.1590/S1516-35982008001300031 DO - 10.1590/S1516-35982008001300031 ID - Arthur2008 ER - TY - JOUR AU - Veerkamp, R. AU - Koenen, E. AU - Jong, G. PY - 2001 DA - 2001// TI - Genetic correlations among body condition score, yield, and fertility in first-parity cows estimated by random regression models JO - J Dairy Sci VL - 84 UR - https://doi.org/10.3168/jds.S0022-0302(01)74681-4 DO - 10.3168/jds.S0022-0302(01)74681-4 ID - Veerkamp2001 ER - TY - JOUR AU - Llewellyn, S. AU - Fitzpatrick, R. AU - Kenny, D. AU - Murphy, J. AU - Scaramuzzi, R. AU - Wathes, D. PY - 2007 DA - 2007// TI - Effect of negative energy balance on the insulin-like growth factor system in pre-recruitment ovarian follicles of post partum dairy cows JO - Reproduction VL - 133 UR - https://doi.org/10.1530/REP-06-0122 DO - 10.1530/REP-06-0122 ID - Llewellyn2007 ER - TY - STD TI - RYK- Ydelseskontrol, https://www.landbrugsinfo.dk/Kvaeg/RYK/Sider/Avereagemilkyieldisnowcloseto10000kgprcowandyears.aspx, Accessed date: 12 June 2017. UR - https://www.landbrugsinfo.dk/Kvaeg/RYK/Sider/Avereagemilkyieldisnowcloseto10000kgprcowandyears.aspx ID - ref11 ER - TY - JOUR AU - Blake, R. W. AU - Custodio, A. A. AU - Howard, W. H. PY - 1986 DA - 1986// TI - Comparative feed efficiency of Holstein and Jersey Cows1 JO - J Dairy Sci VL - 69 UR - https://doi.org/10.3168/jds.S0022-0302(86)80536-7 DO - 10.3168/jds.S0022-0302(86)80536-7 ID - Blake1986 ER - TY - JOUR AU - Wang, Z. AU - Gerstein, M. AU - Snyder, M. PY - 2009 DA - 2009// TI - RNA-Seq: a revolutionary tool for transcriptomics JO - Nat Rev Genet VL - 10 UR - https://doi.org/10.1038/nrg2484 DO - 10.1038/nrg2484 ID - Wang2009 ER - TY - JOUR AU - Suravajhala, P. AU - Kogelman, L. J. AU - Kadarmideen, H. N. PY - 2016 DA - 2016// TI - Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare JO - Genet Sel Evol VL - 48 UR - https://doi.org/10.1186/s12711-016-0217-x DO - 10.1186/s12711-016-0217-x ID - Suravajhala2016 ER - TY - JOUR AU - Li, J. AU - Burmeister, M. PY - 2005 DA - 2005// TI - Genetical genomics: combining genetics with gene expression analysis JO - Hum Mol Genet VL - 14 UR - https://doi.org/10.1093/hmg/ddi267 DO - 10.1093/hmg/ddi267 ID - Li2005 ER - TY - JOUR AU - Brem, R. B. AU - Yvert, G. AU - Clinton, R. AU - Kruglyak, L. PY - 2002 DA - 2002// TI - Genetic dissection of transcriptional regulation in budding yeast JO - Science VL - 296 UR - https://doi.org/10.1126/science.1069516 DO - 10.1126/science.1069516 ID - Brem2002 ER - TY - JOUR AU - Schadt, E. E. AU - Molony, C. AU - Chudin, E. AU - Hao, K. AU - Yang, X. AU - Lum, P. Y. AU - Kasarskis, A. AU - Zhang, B. AU - Wang, S. AU - Suver, C. PY - 2008 DA - 2008// TI - Mapping the genetic architecture of gene expression in human liver JO - PLoS Biol VL - 6 UR - https://doi.org/10.1371/journal.pbio.0060107 DO - 10.1371/journal.pbio.0060107 ID - Schadt2008 ER - TY - STD TI - Kadarmideen HN. Systems biology in animal production and health, vol. 2. Switzerland: Springer; 2016. ID - ref18 ER - TY - JOUR AU - Alexandre, P. A. AU - Kogelman, L. J. AU - Santana, M. H. AU - Passarelli, D. AU - Pulz, L. H. AU - Fantinato-Neto, P. AU - Silva, P. L. AU - Leme, P. R. AU - Strefezzi, R. F. AU - Coutinho, L. L. PY - 2015 DA - 2015// TI - Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-2292-8 DO - 10.1186/s12864-015-2292-8 ID - Alexandre2015 ER - TY - JOUR AU - Paradis, F. AU - Yue, S. AU - Grant, J. AU - Stothard, P. AU - Basarab, J. AU - Fitzsimmons, C. PY - 2015 DA - 2015// TI - Transcriptomic analysis by RNA sequencing reveals that hepatic interferon-induced genes may be associated with feed efficiency in beef heifers JO - J Anim Sci VL - 93 UR - https://doi.org/10.2527/jas.2015-8975 DO - 10.2527/jas.2015-8975 ID - Paradis2015 ER - TY - STD TI - Zhao X-M, Qin G. Identifying biomarkers with differential analysis. In: Bioinformatics for diagnosis, prognosis and treatment of complex diseases. The Netherlands: Springer; 2013. p. 17–31. ID - ref21 ER - TY - JOUR AU - Lkhagvadorj, S. AU - Qu, L. AU - Cai, W. AU - Couture, O. P. AU - Barb, C. R. AU - Hausman, G. J. AU - Nettleton, D. AU - Anderson, L. L. AU - Dekkers, J. C. AU - Tuggle, C. K. PY - 2010 DA - 2010// TI - Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency JO - Am J Phys Regul Integr Comp Phys VL - 298 ID - Lkhagvadorj2010 ER - TY - JOUR AU - Tizioto, P. C. AU - Coutinho, L. L. AU - Oliveira, P. S. AU - Cesar, A. S. AU - Diniz, W. J. AU - Lima, A. O. AU - Rocha, M. I. AU - Decker, J. E. AU - Schnabel, R. D. AU - Mourão, G. B. PY - 2016 DA - 2016// TI - Gene expression differences in longissimus muscle of Nelore steers genetically divergent for residual feed intake JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep39493 DO - 10.1038/srep39493 ID - Tizioto2016 ER - TY - BOOK AU - Armentano, L. AU - Weigel, K. PY - 2013 DA - 2013// TI - Considerations for improving feed efficiency in dairy cattle ID - Armentano2013 ER - TY - JOUR AU - Tao, H. AU - Chang, G. AU - Xu, T. AU - Zhao, H. AU - Zhang, K. AU - Shen, X. PY - 2015 DA - 2015// TI - Feeding a high concentrate diet down-regulates expression of ACACA, LPL and SCD and modifies milk composition in lactating goats JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0130525 DO - 10.1371/journal.pone.0130525 ID - Tao2015 ER - TY - JOUR AU - Salleh, M. AU - Mazzoni, G. AU - Höglund, J. AU - Olijhoek, D. AU - Lund, P. AU - Løvendahl, P. AU - Kadarmideen, H. PY - 2017 DA - 2017// TI - RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high-and low-residual feed intake in Nordic dairy cattle JO - BMC Genomics VL - 18 UR - https://doi.org/10.1186/s12864-017-3622-9 DO - 10.1186/s12864-017-3622-9 ID - Salleh2017 ER - TY - JOUR AU - Kogelman, L. J. AU - Cirera, S. AU - Zhernakova, D. V. AU - Fredholm, M. AU - Franke, L. AU - Kadarmideen, H. N. PY - 2014 DA - 2014// TI - Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA sequencing in a porcine model JO - BMC Med Genet VL - 7 ID - Kogelman2014 ER - TY - JOUR AU - Kadarmideen, H. N. AU - Watson-Haigh, N. S. AU - Andronicos, N. M. PY - 2011 DA - 2011// TI - Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers JO - Mol BioSyst VL - 7 UR - https://doi.org/10.1039/C0MB00190B DO - 10.1039/C0MB00190B ID - Kadarmideen2011 ER - TY - JOUR AU - Kogelman, L. J. AU - Byrne, K. AU - Vuocolo, T. AU - Watson-Haigh, N. S. AU - Kadarmideen, H. N. AU - Kijas, J. W. AU - Oddy, H. V. AU - Gardner, G. E. AU - Gondro, C. AU - Tellam, R. L. PY - 2011 DA - 2011// TI - Genetic architecture of gene expression in ovine skeletal muscle JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-607 DO - 10.1186/1471-2164-12-607 ID - Kogelman2011 ER - TY - JOUR AU - Cogill, S. B. AU - Wang, L. PY - 2014 DA - 2014// TI - Co-expression network analysis of human lncRNAs and cancer genes JO - Cancer Inform VL - 13 ID - Cogill2014 ER - TY - JOUR AU - Langfelder, P. AU - Horvath, S. PY - 2008 DA - 2008// TI - WGCNA: an R package for weighted correlation network analysis JO - BMC bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-559 DO - 10.1186/1471-2105-9-559 ID - Langfelder2008 ER - TY - JOUR AU - Love, M. I. AU - Huber, W. AU - Anders, S. PY - 2014 DA - 2014// TI - Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 JO - Genome Biol VL - 15 UR - https://doi.org/10.1186/s13059-014-0550-8 DO - 10.1186/s13059-014-0550-8 ID - Love2014 ER - TY - JOUR AU - Zhang, B. AU - Horvath, S. PY - 2005 DA - 2005// TI - A general framework for weighted gene co-expression network analysis JO - Stat Appl Genet Mol Biol VL - 4 UR - https://doi.org/10.2202/1544-6115.1128 DO - 10.2202/1544-6115.1128 ID - Zhang2005 ER - TY - JOUR AU - Langfelder, P. AU - Zhang, B. AU - Horvath, S. PY - 2008 DA - 2008// TI - Defining clusters from a hierarchical cluster tree: the dynamic tree cut package for R JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm563 DO - 10.1093/bioinformatics/btm563 ID - Langfelder2008 ER - TY - JOUR AU - Bindea, G. AU - Mlecnik, B. AU - Hackl, H. AU - Charoentong, P. AU - Tosolini, M. AU - Kirilovsky, A. AU - Fridman, W. -. H. AU - Pagès, F. AU - Trajanoski, Z. AU - Galon, J. PY - 2009 DA - 2009// TI - ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp101 DO - 10.1093/bioinformatics/btp101 ID - Bindea2009 ER - TY - JOUR AU - Szklarczyk, D. AU - Franceschini, A. AU - Wyder, S. AU - Forslund, K. AU - Heller, D. AU - Huerta-Cepas, J. AU - Simonovic, M. AU - Roth, A. AU - Santos, A. AU - Tsafou, K. P. PY - 2014 DA - 2014// TI - STRING v10: protein–protein interaction networks, integrated over the tree of life JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1003 DO - 10.1093/nar/gku1003 ID - Szklarczyk2014 ER - TY - JOUR AU - Bauman, D. E. AU - Currie, W. B. PY - 1980 DA - 1980// TI - Partitioning of nutrients during pregnancy and lactation: a review of mechanisms involving homeostasis and homeorhesis JO - J Dairy Sci VL - 63 UR - https://doi.org/10.3168/jds.S0022-0302(80)83111-0 DO - 10.3168/jds.S0022-0302(80)83111-0 ID - Bauman1980 ER - TY - JOUR AU - Xi, Y. AU - Wu, F. AU - Zhao, D. AU - Yang, Z. AU - Li, L. AU - Han, Z. AU - Wang, G. PY - 2016 DA - 2016// TI - Biological mechanisms related to differences in residual feed intake in dairy cows JO - Animal VL - 10 UR - https://doi.org/10.1017/S1751731116000343 DO - 10.1017/S1751731116000343 ID - Xi2016 ER - TY - JOUR AU - Weber, K. L. AU - Welly, B. T. AU - Eenennaam, A. L. AU - Young, A. E. AU - Porto-Neto, L. R. AU - Reverter, A. AU - Rincon, G. PY - 2016 DA - 2016// TI - Identification of gene networks for residual feed intake in angus cattle using genomic prediction and RNA-seq JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0152274 DO - 10.1371/journal.pone.0152274 ID - Weber2016 ER - TY - JOUR AU - Parhami, F. AU - Mody, N. AU - Gharavi, N. AU - Ballard, A. J. AU - Tintut, Y. AU - Demer, L. L. PY - 2002 DA - 2002// TI - Role of the cholesterol biosynthetic pathway in osteoblastic differentiation of marrow stromal cells JO - J Bone Miner Res VL - 17 UR - https://doi.org/10.1359/jbmr.2002.17.11.1997 DO - 10.1359/jbmr.2002.17.11.1997 ID - Parhami2002 ER - TY - JOUR AU - Karisa, B. AU - Moore, S. AU - Plastow, G. PY - 2014 DA - 2014// TI - Analysis of biological networks and biological pathways associated with residual feed intake in beef cattle JO - Anim Sci J VL - 85 UR - https://doi.org/10.1111/asj.12159 DO - 10.1111/asj.12159 ID - Karisa2014 ER - TY - JOUR AU - Graugnard, D. E. AU - Piantoni, P. AU - Bionaz, M. AU - Berger, L. L. AU - Faulkner, D. B. AU - Loor, J. J. PY - 2009 DA - 2009// TI - Adipogenic and energy metabolism gene networks in longissimus lumborum during rapid post-weaning growth in Angus and Angus× Simmental cattle fed high-starch or low-starch diets JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-142 DO - 10.1186/1471-2164-10-142 ID - Graugnard2009 ER - TY - JOUR AU - Horodyska, J. AU - Oster, M. AU - Wimmers, K. AU - Mullen, A. AU - Lawlor, P. AU - Hamill, R. PY - 2016 DA - 2016// TI - P3024 transcriptome analysis of longissimus thoracis et lumborum from pigs divergent in residual feed intake JO - J Anim Sci VL - 94 UR - https://doi.org/10.2527/jas2016.94supplement463a DO - 10.2527/jas2016.94supplement463a ID - Horodyska2016 ER - TY - JOUR AU - Nguyen, T. M. AU - Sawyer, J. K. AU - Kelley, K. L. AU - Davis, M. A. AU - Rudel, L. L. PY - 2012 DA - 2012// TI - Cholesterol esterification by ACAT2 is essential for efficient intestinal cholesterol absorption: evidence from thoracic lymph duct cannulation JO - J Lipid Res VL - 53 UR - https://doi.org/10.1194/jlr.M018820 DO - 10.1194/jlr.M018820 ID - Nguyen2012 ER - TY - JOUR AU - Zhao, Y. AU - Hou, Y. AU - Liu, F. AU - Liu, A. AU - Jing, L. AU - Zhao, C. AU - Luan, Y. AU - Miao, Y. AU - Zhao, S. AU - Li, X. PY - 2016 DA - 2016// TI - Transcriptome analysis reveals that vitamin a metabolism in the liver affects feed efficiency in pigs JO - G3: Genes| Genomes| Genetics VL - 6 ID - Zhao2016 ER - TY - JOUR AU - Hoogeveen, R. C. AU - Reaves, S. K. AU - Lei, K. Y. PY - 1995 DA - 1995// TI - Copper deficiency increases hepatic apolipoprotein AI synthesis and secretion but does not alter hepatic total cellular apolipoprotein AI mRNA abundance in rats JO - J Nutr VL - 125 ID - Hoogeveen1995 ER - TY - JOUR AU - Huster, D. AU - Purnat, T. D. AU - Burkhead, J. L. AU - Ralle, M. AU - Fiehn, O. AU - Stuckert, F. AU - Olson, N. E. AU - Teupser, D. AU - Lutsenko, S. PY - 2007 DA - 2007// TI - High copper selectively alters lipid metabolism and cell cycle machinery in the mouse model of Wilson disease JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M607496200 DO - 10.1074/jbc.M607496200 ID - Huster2007 ER - TY - JOUR AU - Richardson, E. AU - Herd, R. AU - Archer, J. AU - Arthur, P. PY - 2004 DA - 2004// TI - Metabolic differences in Angus steers divergently selected for residual feed intake JO - Anim Prod Sci VL - 44 UR - https://doi.org/10.1071/EA02219 DO - 10.1071/EA02219 ID - Richardson2004 ER - TY - JOUR AU - Arthur, P. AU - Archer, J. AU - Johnston, D. AU - Herd, R. AU - Richardson, E. AU - Parnell, P. PY - 2001 DA - 2001// TI - Genetic and phenotypic variance and covariance components for feed intake, feed efficiency, and other postweaning traits in Angus cattle JO - J Anim Sci VL - 79 UR - https://doi.org/10.2527/2001.79112805x DO - 10.2527/2001.79112805x ID - Arthur2001 ER - TY - JOUR AU - Schaefer, E. J. AU - Gleason, J. A. AU - Dansinger, M. L. PY - 2009 DA - 2009// TI - Dietary fructose and glucose differentially affect lipid and glucose homeostasis JO - J Nutr VL - 139 UR - https://doi.org/10.3945/jn.108.098186 DO - 10.3945/jn.108.098186 ID - Schaefer2009 ER - TY - JOUR AU - Eerden, E. AU - Brand, H. AU - Parmentier, H. AU - Jong, M. PY - 2004 DA - 2004// TI - Phenotypic selection for residual feed intake and its effect on humoral immune responses in growing layer hens JO - Poult Sci VL - 83 UR - https://doi.org/10.1093/ps/83.9.1602 DO - 10.1093/ps/83.9.1602 ID - Eerden2004 ER - TY - BOOK AU - Mpetile, Z. PY - 2014 DA - 2014// TI - Effect of divergent selection for residual feed intake on immune system of Yorkshire pigs UR - https://doi.org/10.31274/etd-180810-30 DO - 10.31274/etd-180810-30 ID - Mpetile2014 ER - TY - JOUR AU - Ametaj, B. AU - Koenig, K. AU - Dunn, S. AU - Yang, W. AU - Zebeli, Q. AU - Beauchemin, K. PY - 2009 DA - 2009// TI - Backgrounding and finishing diets are associated with inflammatory responses in feedlot steers JO - J Anim Sci VL - 87 UR - https://doi.org/10.2527/jas.2008-1196 DO - 10.2527/jas.2008-1196 ID - Ametaj2009 ER - TY - BOOK AU - Roberts, A. AU - Funston, R. AU - Mulliniks, T. AU - Petersen, M. AU - MacNeil, M. PY - 2011 DA - 2011// TI - Feed efficiency-how should it be used for the cow herd? ID - Roberts2011 ER - TY - JOUR AU - Schroder, K. AU - Hertzog, P. J. AU - Ravasi, T. AU - Hume, D. A. PY - 2004 DA - 2004// TI - Interferon-γ: an overview of signals, mechanisms and functions JO - J Leukoc Biol VL - 75 UR - https://doi.org/10.1189/jlb.0603252 DO - 10.1189/jlb.0603252 ID - Schroder2004 ER - TY - JOUR AU - Gondret, F. AU - Vincent, A. AU - Houée-Bigot, M. AU - Siegel, A. AU - Lagarrigue, S. AU - Louveau, I. AU - Causeur, D. PY - 2016 DA - 2016// TI - Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-2438-3 DO - 10.1186/s12864-016-2438-3 ID - Gondret2016 ER - TY - JOUR AU - Reynolds, J. AU - Foote, A. AU - Freetly, H. AU - Oliver, W. AU - Lindholm-Perry, A. PY - 2017 DA - 2017// TI - Relationships between inflammation-and immunity-related transcript abundance in the rumen and jejunum of beef steers with divergent average daily gain JO - Anim Genet VL - 48 UR - https://doi.org/10.1111/age.12546 DO - 10.1111/age.12546 ID - Reynolds2017 ER - TY - JOUR AU - Jungermann, K. AU - Katz, N. PY - 1989 DA - 1989// TI - Functional specialization of different hepatocyte populations JO - Physiol Rev VL - 69 UR - https://doi.org/10.1152/physrev.1989.69.3.708 DO - 10.1152/physrev.1989.69.3.708 ID - Jungermann1989 ER -