Protein complexes identification based on go attributed network embedding

BMC Bioinformatics

Table 2 The PPI data sets used in the experiment

PPI networks	Number of proteins	Number of interactions	Average clustering coefficient	Average number of neighbors
DIP	4928	17,201	0.095	6.981
Krogan-core	2708	7123	0.188	5.261
Krogan14k	3581	14,076	0.122	7.861
Biogrid	5640	59,748	0.246	21.187
Collins	1622	9074	0.555	11.189

Five yeast PPI networks were used in the performance comparison: DIP (Xenarios et al., 2002), Krogan-core (Krogan et al., 2006), Krogan14k (Krogan et al., 2006), Biogrid (Stark et al., 2006), Collins (Collins et al., 2007)

ISSN: 1471-2105