Skip to main content

Advertisement

Table 1 Overlap between Obesity and T2D disease groups and the unsupervised cluster assignments produced from GMM with or without transformation and NBMB

From: Subject level clustering using a negative binomial model for small transcriptomic studies

  Non-obese & Normal glucose tolerant Non-obese & T2D Obese & Normal glucose tolerant Obese & T2D
GMM None
 C1 16 (66.7%) 4 (16.7%) 4 (16.7%) 8 (33.2%)
 C2 8 (33.3%) 4 (16.7%) 8 (33.2%) 8 (33.2%)
 C3 0 8 (33.2%) 4 (16.7%) 4 (16.7%)
 C4 0 4 (16.7%) 8 (33.2%) 4 (16.7%)
 C5 0 4 (16.7%) 0 0
GMM Blom
 C1 20 (83.3%) 4 (16.7%) 4 (16.7%) 4 (16.7%)
 C2 4 (16.7%) 0 0 4 (16.7%)
 C3 0 12 (50%) 12 (50%) 8 (33.4%)
 C4 0 4 (16.7%) 8 (33.4%) 4 (16.7%)
 C5 0 4 (16.7%) 0 4 (16.7%)
GMM Log
 C1 16 (66.7%) 4 (16.7%) 4 (16.7%) 8 (33.2%)
 C2 8 (33.3%) 4 (16.7%) 8 (33.2%) 8 (33.2%)
 C3 0 8 (33.2%) 4 (16.7%) 4 (16.7%)
 C4 0 4 (16.7%) 8 (33.2%) 4 (16.7%)
 C5 0 4 (16.7%) 0 0
NBMB
 C1 24 (100%) 8 (33.3%) 8 (33.3%) 12 (50%)
 C2 0 16 (66.7%) 16 (66.7%) 12 (50%)