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Table 2 Overlap between CLOVAR subtypes and the unsupervised cluster assignments produced from GMM with or without transformation and NBMB

From: Subject level clustering using a negative binomial model for small transcriptomic studies

  Differentiated Immunoreactive Mesenchymal Proliferative
GMM None
 C1 43 (68.25%) 85 (87.63%) 48 (87.27%) 27 (33.75%)
 C2 11 (17.46%) 12 (12.37%) 7 (12.73%) 50 (62.5%)
 C3 8 (12.7%) 0 0 1 (1.25%)
 C4 1 (1.59%) 0 0 2 (2.5%)
GMM Blom
 C1 5 (7.94%) 22 (22.68%) 44 (80%) 4 (5%)
 C2 38 (60.32%) 54 (55.57%) 8 (14.55%) 2 (2.5%)
 C3 4 (6.35%) 12 (12.37%) 3 (5.45%) 59 (73.75%)
 C4 16 (25.39%) 9 (9.28%) 0 15 (18.75%)
GMM Log
 C1 33 (52.38%) 52 (53.61%) 5 (9.1%) 19 (23.75%)
 C2 16 (25.4%) 36 (37.11%) 47 (85.45%) 4 (5%)
 C3 13 (20.63%) 4 (4.13%) 0 17 (21.25%)
 C4 1 (1.59%) 5 (5.15%) 3 (5.45%) 40 (50%)
NBMB
 C1 37 (58.73%) 69 (71.13%) 10 (18.18%) 1 (1.25%)
 C2 9 (14.29%) 21 (21.65%) 43 (78.18%) 19 (23.75%)
 C3 17 (26.98%) 7 (7.22%) 2 (3.64%) 60 (75%)