Table 2 Overlap between CLOVAR subtypes and the unsupervised cluster assignments produced from GMM with or without transformation and NBMB
From: Subject level clustering using a negative binomial model for small transcriptomic studies
| Â | Differentiated | Immunoreactive | Mesenchymal | Proliferative |
|---|---|---|---|---|
GMM None | ||||
 C1 | 43 (68.25%) | 85 (87.63%) | 48 (87.27%) | 27 (33.75%) |
 C2 | 11 (17.46%) | 12 (12.37%) | 7 (12.73%) | 50 (62.5%) |
 C3 | 8 (12.7%) | 0 | 0 | 1 (1.25%) |
 C4 | 1 (1.59%) | 0 | 0 | 2 (2.5%) |
GMM Blom | ||||
 C1 | 5 (7.94%) | 22 (22.68%) | 44 (80%) | 4 (5%) |
 C2 | 38 (60.32%) | 54 (55.57%) | 8 (14.55%) | 2 (2.5%) |
 C3 | 4 (6.35%) | 12 (12.37%) | 3 (5.45%) | 59 (73.75%) |
 C4 | 16 (25.39%) | 9 (9.28%) | 0 | 15 (18.75%) |
GMM Log | ||||
 C1 | 33 (52.38%) | 52 (53.61%) | 5 (9.1%) | 19 (23.75%) |
 C2 | 16 (25.4%) | 36 (37.11%) | 47 (85.45%) | 4 (5%) |
 C3 | 13 (20.63%) | 4 (4.13%) | 0 | 17 (21.25%) |
 C4 | 1 (1.59%) | 5 (5.15%) | 3 (5.45%) | 40 (50%) |
NBMB | ||||
 C1 | 37 (58.73%) | 69 (71.13%) | 10 (18.18%) | 1 (1.25%) |
 C2 | 9 (14.29%) | 21 (21.65%) | 43 (78.18%) | 19 (23.75%) |
 C3 | 17 (26.98%) | 7 (7.22%) | 2 (3.64%) | 60 (75%) |