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Table 1 The structural characteristics of the reconstructed associative gene networks of the extrinsic apoptotic signaling pathway

From: A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression

Name

Combined network

Lymph node

Endometrium

Embryo

Retina

Substantia nigra

Number of nodes

441

403

389

307

175

345

Clustering coefficient

0,393,954

0,400,993

0,406,731

0,40,788

0,335,677a

0,403,556

Number of connected components

22

18

14a

18a

16a

14a

Network centralization

0,262,094

0,265,214

0,216,362a

0,203,354a

0,182,878a

0,212,608a

Number of shortest paths

1,381,738

1149342a

1125256a

551226a

82194a

793364a

Average number of neighbors

13,20,181

12,91,315a

12,48,329a

9179153a

5542857a

11,28,696a

Network density

0,030004

0,032122a

0,032173a

0,029997

0,031856

0,032811a

Network heterogeneity

120,3538

112,1453

105,4192a

78,93,359a

45,57,004a

94,84,783a

  1. a statistically significant differences from the combined network with p-value< 0.05