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Table 1 Summary of scoring models and randomization methods

From: CoExpresso: assess the quantitative behavior of protein complexes in human cells

Model

Abbrv.

Output

Mean correlation

MCOM

Similarity to averaged abundance profile

Pairwise correlation

PCOM

Sum of pairwise similarities

Factor analysis

FAM

Weights for protein contribution to full set

Randomization

Abbrv.

Basis

Independent sampling

IS

Mix all values

Protein-centered sampling

PCS

Keep protein profiles

Protein- and cell type- centered sampling

PTCS

Keep protein and cell type profiles