Table 1 Comparison of different software packages for visualization and analysis of Single Molecule Localization data
From: SMoLR: visualization and analysis of single-molecule localization microscopy data in R
Programming environment | Visualization | Clustering/ segmentation | Quantification | GUI | Batch mode/Scriptable | Reference | |
|---|---|---|---|---|---|---|---|
VisP | C++ | + | – | – | + | – | [11] |
PALMsiever | Matlab | + | – | – | + | + | [10] |
SR-Tesseler | C++ | + | Voronoi | + | + | – | [13] |
PYME | Python | + | – | – | + | + | [12] |
SharpViSu | Matlab | + | Ripley/Voronoi | + | + | – | [15] |
LAMA | Python | – | Ripley/DBSCAN | + | + | – | [16] |
3DClusterViSu | Matlab/Python | + | 3D Voronoi | + | + | + | [14] |
Grafeo | Matlab | + | Ripley/Voronoi | + | + | + | [17] |
SMoLR | R | + | KDE/DBSCAN | + | + | + | this paper |