Dataset | Tool | Map rate (%) | Accuracy (%) T=0 | Accuracy (%) T=10 | Accuracy (%) T=100 | Time (s) |
---|---|---|---|---|---|---|
Wgsim-S0 | IM | 99.66 | 94.5 | 94.9 | 94.9 | 40 |
 | Meta-aligner | 95.31 | 93.40 | 93.73 | 93.74 | 58 |
 | BWA-MEM | 97.81 | 99.81 | 99.99 | 100 | 20 |
 | Minimap2 | 97.44 | 97.94 | 99.99 | 99.99 | 12 |
Wgsim-S1 | IM | 99.95 | 97.36 | 97.9 | 97.9 | 97 |
 | Meta-aligner | 97.79 | 94.76 | 96.27 | 96.29 | 174 |
 | BWA-MEM | 98.89 | 99.78 | 99.99 | 99.99 | 79 |
 | Minimap2 | 98.67 | 97.86 | 99.99 | 99.99 | 25 |
Wgsim-S2 (Indel rich) | IM | 99.43 | 87.17 | 95.52 | 96.62 | 360 |
 | Meta-aligner | 70.74 | 21.58 | 79.6 | 90.65 | 501 |
 | BWA-MEM | 97.65 | 85.42 | 99.94 | 99.97 | 130 |
 | Minimap2 | 97.99 | 75.76 | 99.16 | 99.98 | 23 |
Wgsim-S3 (Mismatch rich) | IM | 99.46 | 95.13 | 96.62 | 96.62 | 352 |
 | Meta-aligner | 99.05 | 67.09 | 96.21 | 96.23 | 202 |
 | BWA-MEM | 98.38 | 82.18 | 90.86 | 99.91 | 134 |
 | Minimap2 | 97.79 | 76.60 | 98.94 | 99.99 | 24 |
Wgsim-L0 (Indel rich) | IM | 99.96 | 78.04 | 97.27 | 97.37 | 780 |
 | Meta-aligner | 79.96 | 7.41 | 39.2 | 92.37 | 1928 |
 | BWA-MEM | 98.84 | 74.78 | 99.69 | 99.98 | 180 |
 | Minimap2 | 99.04 | 59.02 | 94.58 | 99.98 | 47 |
Wgsim-L1 | IM | 99.81 | 99.02 | 99.05 | 99.05 | 438 |
 | Meta-aligner | 99.49 | 90.71 | 97.71 | 97.73 | 2306 |
 | BWA-MEM | 99.20 | 99.10 | 100 | 100 | 118 |
 | Minimap2 | 99.05 | 98.06 | 100 | 100 | 33 |
Wgsim-L2 (Indel rich) | IM | 98.63 | 76.61 | 99.14 | 99.14 | 1954 |
 | Meta-aligner | 95.97 | 5.02 | 31.56 | 94.23 | 6103 |
 | BWA-MEM | 99.22 | 75.00 | 99.77 | 99.98 | 318 |
 | Minimap2 | 99.22 | 58.69 | 94.74 | 99.98 | 72 |
SimLoRD | IM | 92.79 | 89.75 | 93.69 | 93.69 | 991 |
 | Meta-aligner | 92.79 | 0.08 | 22.15 | 42.09 | 1851 |
 | BWA-MEM | 92.43 | 85.46 | 95.98 | 97.65 | 458 |
 | Minimap2 | 92.43 | 79.88 | 98.07 | 99.89 | 75 |
PBSim | IM | 99.75 | 88.60 | 95.81 | 95.96 | 1098 |
 | Meta-aligner | 90.55 | 1.05 | 5.15 | 40.49 | 3918 |
 | BWA-MEM | 98.65 | 65.22 | 96.01 | 97.65 | 567 |
 | Minimap2 | 98.93 | 54.50 | 95.56 | 99.98 | 78 |
SRX533609 | IM | 92.35 | - | - | - | 9031 |
 | Meta-aligner | 70.05 | - | - | - | 24,393 |
 | BWA-MEM | 92.75 | - | - | - | 3653 |
 | Minimap2 | 89.58 | - | - | - | 348 |
ERX1366175 | IM | 97.33 | - | - | - | 2780 |
 | Meta-aligner | 88.15 | - | - | - | 14,303 |
 | BWA-MEM | 95.24 | - | - | - | 1512 |
 | Minimap2 | 94.14 | - | - | - | 146 |