Table 2 Results of methylation calling
From: An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping
450 K (48421) | BatMeth2 | Biscuit | bwameth | BSmap | Bismark-b2 | Bismark-L15 | Bismark-b1 |
|---|---|---|---|---|---|---|---|
Detected | 379,139 | 379,209 | 378,256 | 374,735 | 364,581 | 364,518 | 352,995 |
78.59% | 78.60% | 78.40% | 77.68% | 75.57% | 75.56% | 73.17% | |
Correct | 320,650 | 320,549 | 319,634 | 316,620 | 307,121 | 307,058 | 297,399 |
66.47% | 66.45% | 66.26% | 65.63% | 63.66% | 63.65% | 61.65% | |
Wrong | 58,489 | 58,660 | 58,622 | 58,115 | 57,460 | 57,460 | 55,596 |
12.12% | 12.16% | 12.15% | 12.05% | 12.91% | 11.91% | 11.52% |