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Table 7 Average runtime of identifying DE genes in real data by each tool

From: Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data

Methods

Platform

Time consumption in minutes

DESeq2

R

4.2

edgeR

R

0.41

scDD

R

85.13

EMDomics

R

14.64

MAST

R

1.47

D3E

Python

38.43

Monocle2

R

2.6

SCDE

R

10.39

SINCERA

R

0.3

DEsingle

R

14.97

SigEMD

R

14.86

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BMC Bioinformatics

ISSN: 1471-2105

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