Table 1 Execution speed of MH with various input file sizes, number of detected peaks and computational systems
From: Manhattan Harvester and Cropper: a system for GWAS peak detection
Min p-val | Peaks | File size (MB) | Data points (rows) | PC, sec (mean ± stdev) | HPC, sec (mean ± stdev) |
|---|---|---|---|---|---|
0.01 | 1 | 0.257 | 8507 | 0.037 ± 0.0018 | 0.037 ± 0.0045 |
0.01 | 3 | 0.348 | 11,781 | 0.052 ± 0.0049 | 0.056 ± 0.011 |
0.01 | 5 | 0.215 | 7116 | 0.031 ± 0.0018 | 0.033 ± 0.0033 |
< 1 | 6 | 85 | 560,646 | NA | 3.07 ± 0.0758 |