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Table 11 Biomedical event extraction results

From: From POS tagging to dependency parsing for biomedical event extraction

System

Development

Test

  

R

P

F 1

R

P

F 1

 

Stanford&Paris

49.92

55.75

52.67

45.03

56.93

50.29

 

BLLIP+Bio

47.90

61.54

53.87 52.35

41.45

60.45

49.18 49.19

GENIA

Stanford-Biaffine-v2

50.53

56.47

53.34 53.18

43.87

56.36

49.34 49.47

 

jPTDP-v1

49.30

58.58

53.54 52.08

42.11

54.94

47.68 48.88

 

NLP4J-dep

51.93

55.15

53.49 52.20

45.88

55.53

50.25 49.08

 

Stanford-NNdep

46.79

60.36

52.71 51.38

40.16

59.75

48.04 48.51

CRAFT

Stanford-Biaffine-v2

49.47

57.98

53.39 52.98

42.08

58.65

49.00 49.84

 

jPTDP-v1

49.36

58.22

53.42 52.01

40.82

58.57

48.11 49.57

 

NLP4J-dep

48.91

53.13

50.93 51.03

41.95

51.88

46.39 47.46

 

Stanford-NNdep

46.34

56.83

51.05 51.01

38.87

59.64

47.07 46.38

  1. The subscripts denote results for which TEES is trained without the dependency labels