Table 2 Proportion of variants within each MAF range category. The MAF range we specified when simulating the data was [0.0005,0.01]
|  | N_cases = N_controls = 250 | N_cases = N_controls = 1000 | |||||
|---|---|---|---|---|---|---|---|
Simulator | MAF range | [0,0.0005) | [0.0005,0.01] | (0.01,0.5) | [0,0.0005) | [0.0005,0.01] | (0.01,0.5) |
sim1000G | n = 72 | 9.00% | 89.10% | 1.80% | 0.10% | 98.60% | 1.30% |
n = 147 | 14.30% | 85.10% | 0.60% | 0.70% | 99.10% | 0.20% | |
n = 442 | 14.40% | 84.00% | 1.60% | 0.70% | 98.50% | 0.80% | |
simuPOP | n = 72 | 33.20% | 65.30% | 1.50% | 14.60% | 84.30% | 1.10% |
n = 147 | 27.90% | 70.00% | 2.10% | 11.40% | 86.70% | 1.90% | |
n = 442 | 28.20% | 69.20% | 2.70% | 11.70% | 86.80% | 1.60% | |