PIXER: an automated particle-selection method based on segmentation using a deep neural network

BMC Bioinformatics

Table 1 Data used in the training datasets

Name	10,017	10,028	10,081	10,097	GroEl	SIMU
Electron Dose (e/Å**2)	24.0	20.0	1.26	82.0	30	[20,50.0]
Nominal CS (mm)	2.00	2.00	–	2.70	–	[2, 3]
Defocus Max (nm)	4962	3800	3300	3500	2400	[2200,3700]
Defocus Min (nm)	1359	800	1500	1000	1000	[800,1500]
Symmetry	D2	C1	C4	C3	D7	–
Number of Images	84	90	124	153	25	496
Particle Size	177	360	256	256	140	[100, 256]
Number of Particles	42,468	13,942	16,666	51,844	6121	18,746
Pixel Size (Å)	1.77	1.34	1.3	1.31	1.3	[1.3,1.8]
Size of Micrograph	4096*4096	4096*4096	3710*3838	3838*3710	3838*3710	1024*1024

ISSN: 1471-2105