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Table 3 The time cost of each part of PIXER (Unit: s)

From: PIXER: an automated particle-selection method based on segmentation using a deep neural network

  Pdb1f07 KLH 10,005 10,184 10,075
Micrograph Size 1024*1024 2048*2048 3710*3710 3838*3710 4096*4096
Particle Size 100*100 272*272 180*180 256*256 300*300
Preprocessing 0.17 0.57 3.08 3.72 3.75
Segmentation 0.55 3.64 9.92 9.58 11.23
Classification 2.26 3.12 8.63 6.84 2.75
Postprocessing 0.34 4.59 20.03 6.99 30.38
Total Time 3.32 11.94 41.67 47.17 48.07
DeepPicker 10.47 23.75 80.76 81.34 95.43
DeepEM 40.56 80.54 65.47 39.75 54.38