Table 3 The time cost of each part of PIXER (Unit: s)
From: PIXER: an automated particle-selection method based on segmentation using a deep neural network
| Â | Pdb1f07 | KLH | 10,005 | 10,184 | 10,075 |
|---|---|---|---|---|---|
Micrograph Size | 1024*1024 | 2048*2048 | 3710*3710 | 3838*3710 | 4096*4096 |
Particle Size | 100*100 | 272*272 | 180*180 | 256*256 | 300*300 |
Preprocessing | 0.17 | 0.57 | 3.08 | 3.72 | 3.75 |
Segmentation | 0.55 | 3.64 | 9.92 | 9.58 | 11.23 |
Classification | 2.26 | 3.12 | 8.63 | 6.84 | 2.75 |
Postprocessing | 0.34 | 4.59 | 20.03 | 6.99 | 30.38 |
Total Time | 3.32 | 11.94 | 41.67 | 47.17 | 48.07 |
DeepPicker | 10.47 | 23.75 | 80.76 | 81.34 | 95.43 |
DeepEM | 40.56 | 80.54 | 65.47 | 39.75 | 54.38 |