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Table 3 Base composition of discordant SNVs in percentages (mean ± standard deviation)

From: Similarities and differences between variants called with human reference genome HG19 or HG38

Type Base Picard CrossMap
HG38➔HG19 HG19➔HG38 HG38➔HG19 HG19➔HG38
Position discordant SNVs A 23.43 ± 0.78 23.74 ± 0.81 23.32 ± 0.81 23.66 ± 0.80
T 23.86 ± 0.67 24.02 ± 0.86 23.64 ± 0.70 23.89 ± 0.85
G 26.21 ± 0.71 25.92 ± 0.8 26.37 ± 0.75 26.06 ± 0.78
C 26.5 ± 0.81 26.32 ± 0.87 26.62 ± 0.81 26.35 ± 0.89
G + C 52.71 ± 1.44 52.24 ± 1.64 52.99 ± 1.49 52.41 ± 1.64
Genotype discordant SNVs A 23.06 ± 1.61 23.07 ± 1.66 23.49 ± 0.88 23.57 ± 0.91
T 23.11 ± 1.66 23.07 ± 1.75 23.59 ± 0.81 23.67 ± 0.93
G 26.74 ± 1.65 26.84 ± 1.92 26.79 ± 0.81 26.19 ± 1.16
C 27.08 ± 1.47 27.02 ± 1.45 26.13 ± 0.92 26.57 ± 0.67
G + C 53.82 ± 2.93 53.86 ± 3.13 52.92 ± 1.62 52.77 ± 1.73