Table 10 Coverage evaluation. Average short, medium (Med), and long range coverage values at δ = 0 resolution for the top L/10 contact predictions from various predictors (with our methods listed in bold font) evaluated on CASP11 targets and sorted by short range scores
From: Predicting protein residue-residue contacts using random forests and deep networks
Method | Short | Med | Long |
|---|---|---|---|
CONSIP2 (94) | 22.54% | 15.66% | 4.07% |
RaptorX-Contact (94) | 17.27% | 12.03% | 2.21% |
rf_full (78) | 14.45% | 7.62% | 1.68% |
MULTICOM-NOVEL (94) | 13.37% | 5.66% | 0.44% |
rf_select (78) | 13.18% | 6.75% | 1.51% |
sda_Ensemble (78) | 11.09% | 5.81% | 1.05% |
sda_balanced (78) | 10.20% | 4.47% | 0.58% |
svm (78) | 9.53% | 4.33% | 1.18% |
PLCT (91) | 7.25% | 3.59% | 0.36% |
Pcons-net (87) | 7.00% | 7.50% | 2.73% |
raghavagps-paaint (76) | 5.05% | 3.60% | 0.65% |
DCA (88) | 5.02% | 6.74% | 2.20% |
IASL-COPE (91) | 4.41% | 3.93% | 1.24% |
sda_unbalanced (78) | 3.87% | 3.74% | 0.91% |
FoDTcm (32) | 2.06% | 0.98% | 0.15% |
MLiD (94) | N/A | 9.69% | 1.81% |