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Table 3 Long range accuracy evaluation 1. Average long range accuracy values at δ = 2 resolution for the top 10, top L/10, and top L/5 contact predictions from various predictors (with our methods listed in bold font) evaluated on CASP11 targets and sorted by Top 10 accuracy scores

From: Predicting protein residue-residue contacts using random forests and deep networks

Method

Top 10

L/10

L/5

CONSIP2 (94)

71.71%

70.18%

67.30%

RaptorX-Contact (94)

61.60%

56.80%

55.63%

rf_full (78)

54.49%

52.98%

52.09%

MLiD (94)

53.51%

49.98%

46.99%

svm (78)

52.44%

48.75%

46.25%

rf_select (78)

50.77%

50.05%

48.66%

DCA _cpp(88)

47.07%

44.10%

40.82%

sda_Ensemble (78)

43.85%

42.65%

42.16%

sda_unbalanced (78)

37.91%

38.81%

37.78%

IASL-COPE (91)

37.58%

34.87%

33.70%

sda_balanced (78)

35.51%

33.90%

34.19%

MULTICOM-NOVEL (94)

27.97%

27.25%

27.12%

raghavagps-paaint (76)

26.50%

26.37%

26.68%

Pcons-net (87)

17.72%

18.41%

18.93%

FoDTcm (32)

17.71%

17.45%

18.10%

PLCT (91)

16.87%

17.24%

17.08%