Table 3 Overlapped pathways in the top 10 significant pathways found by each method in five colorectal cancer datasets (GSE4107, GSE8671, GSE9348, GSE23878, GSE4183)
From: FoPA: identifying perturbed signaling pathways in clinical conditions using formal methods
Overlapping Pathways in four colorectal cancer datasets | Overlapping Pathways in three colorectal cancer datasets | |||
|---|---|---|---|---|
KEGG ID | Name | KEGG ID | Name | |
FoPA | 04962 | Vasopressin-regulated water reabsorption | 04976 | Bile secretion |
04960 | Aldosterone-regulated sodium reabsorption | 04064 | NF-kappa B signaling pathway | |
04978 | Mineral absorption | |||
05010 | Alzheimer’s disease | |||
PADOG | 05210 | Colorectal cancer | 05211 | Renal cell carcinoma |
05222 | Small cell lung cancer | |||
CePa | 04310 | Wnt signaling pathway | 00051 | Fructose and mannose metabolism |
04514 | Cell adhesion molecules (CAMs) | 00563 | Glycosylphosphatidylinositol (GPI)-anchor biosynthesis | |
00430 | Taurine and hypotaurine metabolism | |||
04810 | Regulation of actin cytoskeleton | |||
04722 | Neurotrophin signaling pathway | |||
00250 | Alanine, aspartate and glutamate metabolism | |||
00983 | Drug metabolism - other enzymes | |||
05414 | Dilated cardiomyopathy (DCM) | |||
SPIA | 4512 | ECM-receptor interaction | 3320 | PPAR signaling pathway |
4062 | Chemokine signaling pathway | |||
4110 | Cell cycle | |||
4725 | Cholinergic synaps | |||