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Table 3 Overlapped pathways in the top 10 significant pathways found by each method in five colorectal cancer datasets (GSE4107, GSE8671, GSE9348, GSE23878, GSE4183)

From: FoPA: identifying perturbed signaling pathways in clinical conditions using formal methods

  Overlapping Pathways in four colorectal cancer datasets Overlapping Pathways in three colorectal cancer datasets
KEGG ID Name KEGG ID Name
FoPA 04962 Vasopressin-regulated water reabsorption 04976 Bile secretion
04960 Aldosterone-regulated sodium reabsorption 04064 NF-kappa B signaling pathway
   04978 Mineral absorption
   05010 Alzheimer’s disease
PADOG 05210 Colorectal cancer 05211 Renal cell carcinoma
05222 Small cell lung cancer  
CePa 04310 Wnt signaling pathway 00051 Fructose and mannose metabolism
04514 Cell adhesion molecules (CAMs) 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
00430 Taurine and hypotaurine metabolism   
04810 Regulation of actin cytoskeleton   
04722 Neurotrophin signaling pathway   
00250 Alanine, aspartate and glutamate metabolism   
00983 Drug metabolism - other enzymes   
05414 Dilated cardiomyopathy (DCM)   
SPIA 4512 ECM-receptor interaction 3320 PPAR signaling pathway
   4062 Chemokine signaling pathway
   4110 Cell cycle
   4725 Cholinergic synaps