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Table 2 Performances comparison with different negative samples selecting strategies (random strategy is denoted “random”, our strategy is “reliable”)

From: Prediction of drug-disease associations based on ensemble meta paths and singular value decomposition

Methods

AUPR

AUC

PRE

REC

ACC

MCC

F1

 

Random

Reliable

Random

Reliable

Random

Reliable

Random

Reliable

Random

Reliable

Random

Reliable

Random

Reliable

meta-path-1

0.894

0.896

0.859

0.861

0.786

0.771

0.875

0.891

0.835

0.835

0.673

0.677

0.827

0.826

meta-path-2

0.930

0.936

0.925

0.928

0.873

0.850

0.839

0.873

0.850

0.861

0.702

0.722

0.855

0.860

meta-path-3

0.921

0.926

0.902

0.905

0.826

0.832

0.862

0.883

0.843

0.858

0.690

0.719

0.842

0.855

meta-path-4

0.894

0.895

0.858

0.860

0.782

0.790

0.882

0.867

0.836

0.832

0.676

0.667

0.828

0.826

meta-path-5

0.918

0.920

0.892

0.895

0.809

0.800

0.900

0.925

0.859

0.865

0.721

0.737

0.852

0.858

ensemble

0.954

0.956

0.949

0.951

0.924

0.913

0.837

0.854

0.871

0.876

0.745

0.755

0.878

0.882