Skip to main content

Table 2 Performances comparison with different negative samples selecting strategies (random strategy is denoted “random”, our strategy is “reliable”)

From: Prediction of drug-disease associations based on ensemble meta paths and singular value decomposition

Methods AUPR AUC PRE REC ACC MCC F1
  Random Reliable Random Reliable Random Reliable Random Reliable Random Reliable Random Reliable Random Reliable
meta-path-1 0.894 0.896 0.859 0.861 0.786 0.771 0.875 0.891 0.835 0.835 0.673 0.677 0.827 0.826
meta-path-2 0.930 0.936 0.925 0.928 0.873 0.850 0.839 0.873 0.850 0.861 0.702 0.722 0.855 0.860
meta-path-3 0.921 0.926 0.902 0.905 0.826 0.832 0.862 0.883 0.843 0.858 0.690 0.719 0.842 0.855
meta-path-4 0.894 0.895 0.858 0.860 0.782 0.790 0.882 0.867 0.836 0.832 0.676 0.667 0.828 0.826
meta-path-5 0.918 0.920 0.892 0.895 0.809 0.800 0.900 0.925 0.859 0.865 0.721 0.737 0.852 0.858
ensemble 0.954 0.956 0.949 0.951 0.924 0.913 0.837 0.854 0.871 0.876 0.745 0.755 0.878 0.882