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Fig. 7 | BMC Bioinformatics

Fig. 7

From: Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling

Fig. 7

Good decoy ratio increases as iteration proceeds. At each iteration step, a total of 1000 decoys were generated by Rosetta using corresponding weights of energy terms. Here a decoy is called “good decoy" if it has a RMSD less than 6 Å to the native structure. The figure suggests that the “good decoy ratio" significantly increases, e.g. the ratio increases from 0.01 to over 0.2 for protein 1iloA. Thus, Rosetta can generate high-quality decoys more efficiently

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